Using Morphological, Molecular and Climatic Data to Delimitate Yews along the Hindu Kush-Himalaya and Adjacent Regions
Identifieur interne : 000188 ( Main/Exploration ); précédent : 000187; suivant : 000189Using Morphological, Molecular and Climatic Data to Delimitate Yews along the Hindu Kush-Himalaya and Adjacent Regions
Auteurs : Ram C. Poudel [République populaire de Chine, Royaume-Uni] ; Michael Möller [République populaire de Chine, Royaume-Uni] ; Lian-Ming Gao [République populaire de Chine] ; Antje Ahrends [Royaume-Uni] ; Sushim R. Baral [Népal] ; Jie Liu [République populaire de Chine] ; Philip Thomas [Royaume-Uni] ; De-Zhu Li [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
Despite the availability of several studies to clarify taxonomic problems on the highly threatened yews of the Hindu Kush-Himalaya (HKH) and adjacent regions, the total number of species and their exact distribution ranges remains controversial. We explored the use of comprehensive sets of morphological, molecular and climatic data to clarify taxonomy and distributions of yews in this region.
A total of 743 samples from 46 populations of wild yew and 47 representative herbarium specimens were analyzed. Principle component analyses on 27 morphological characters and 15 bioclimatic variables plus altitude and maximum parsimony analysis on molecular ITS and trnL-F sequences indicated the existence of three distinct species occurring in different ecological (climatic) and altitudinal gradients along the HKH and adjacent regions
The detailed sampling and combination of different data sets allowed us to identify three clearly delineated species and their precise distribution ranges in the HKH and adjacent regions, which showed no overlap or no distinct hybrid zone. This might be due to differences in the ecological (climatic) requirements of the species. The analyses further provided the selection of diagnostic morphological characters for the identification of yews occurring in the HKH and adjacent regions. Our work demonstrates that extensive sampling combined with the analysis of diverse data sets can reliably address the taxonomy of morphologically challenging plant taxa.
Url:
DOI: 10.1371/journal.pone.0046873
PubMed: 23056501
PubMed Central: 3466193
Affiliations:
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Poudel</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>The Graduate University of the Chinese Academy of Sciences, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Graduate University of the Chinese Academy of Sciences, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Moller, Michael" sort="Moller, Michael" uniqKey="Moller M" first="Michael" last="Möller">Michael Möller</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Gao, Lian Ming" sort="Gao, Lian Ming" uniqKey="Gao L" first="Lian-Ming" last="Gao">Lian-Ming Gao</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Ahrends, Antje" sort="Ahrends, Antje" uniqKey="Ahrends A" first="Antje" last="Ahrends">Antje Ahrends</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Baral, Sushim R" sort="Baral, Sushim R" uniqKey="Baral S" first="Sushim R." last="Baral">Sushim R. Baral</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>National Herbarium and Plant Laboratories, Department of Plant Resources, Godawari, Lalitpur, Nepal</addr-line></nlm:aff><country xml:lang="fr">Népal</country><wicri:regionArea>National Herbarium and Plant Laboratories, Department of Plant Resources, Godawari, Lalitpur</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Jie" sort="Liu, Jie" uniqKey="Liu J" first="Jie" last="Liu">Jie Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Thomas, Philip" sort="Thomas, Philip" uniqKey="Thomas P" first="Philip" last="Thomas">Philip Thomas</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Li, De Zhu" sort="Li, De Zhu" uniqKey="Li D" first="De-Zhu" last="Li">De-Zhu Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23056501</idno><idno type="pmc">3466193</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3466193</idno><idno type="RBID">PMC:3466193</idno><idno type="doi">10.1371/journal.pone.0046873</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000278</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000278</idno><idno type="wicri:Area/Pmc/Curation">000278</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000278</idno><idno type="wicri:Area/Pmc/Checkpoint">000107</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000107</idno><idno type="wicri:Area/Ncbi/Merge">000260</idno><idno type="wicri:Area/Ncbi/Curation">000260</idno><idno type="wicri:Area/Ncbi/Checkpoint">000260</idno><idno type="wicri:Area/Main/Merge">000191</idno><idno type="wicri:Area/Main/Curation">000188</idno><idno type="wicri:Area/Main/Exploration">000188</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Using Morphological, Molecular and Climatic Data to Delimitate Yews along the Hindu Kush-Himalaya and Adjacent Regions</title><author><name sortKey="Poudel, Ram C" sort="Poudel, Ram C" uniqKey="Poudel R" first="Ram C." last="Poudel">Ram C. Poudel</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>The Graduate University of the Chinese Academy of Sciences, Beijing, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Graduate University of the Chinese Academy of Sciences, Beijing</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Moller, Michael" sort="Moller, Michael" uniqKey="Moller M" first="Michael" last="Möller">Michael Möller</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Gao, Lian Ming" sort="Gao, Lian Ming" uniqKey="Gao L" first="Lian-Ming" last="Gao">Lian-Ming Gao</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Ahrends, Antje" sort="Ahrends, Antje" uniqKey="Ahrends A" first="Antje" last="Ahrends">Antje Ahrends</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Baral, Sushim R" sort="Baral, Sushim R" uniqKey="Baral S" first="Sushim R." last="Baral">Sushim R. Baral</name><affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>National Herbarium and Plant Laboratories, Department of Plant Resources, Godawari, Lalitpur, Nepal</addr-line></nlm:aff><country xml:lang="fr">Népal</country><wicri:regionArea>National Herbarium and Plant Laboratories, Department of Plant Resources, Godawari, Lalitpur</wicri:regionArea></affiliation></author><author><name sortKey="Liu, Jie" sort="Liu, Jie" uniqKey="Liu J" first="Jie" last="Liu">Jie Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Thomas, Philip" sort="Thomas, Philip" uniqKey="Thomas P" first="Philip" last="Thomas">Philip Thomas</name><affiliation wicri:level="1"><nlm:aff id="aff4"><addr-line>Royal Botanic Garden Edinburgh, Edinburgh, Scotland, United Kingdom</addr-line></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Royal Botanic Garden Edinburgh, Edinburgh, Scotland</wicri:regionArea></affiliation></author><author><name sortKey="Li, De Zhu" sort="Li, De Zhu" uniqKey="Li D" first="De-Zhu" last="Li">De-Zhu Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming</wicri:regionArea></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Despite the availability of several studies to clarify taxonomic problems on the highly threatened yews of the Hindu Kush-Himalaya (HKH) and adjacent regions, the total number of species and their exact distribution ranges remains controversial. We explored the use of comprehensive sets of morphological, molecular and climatic data to clarify taxonomy and distributions of yews in this region.</p></sec><sec><title>Methodology/Principal Findings</title><p>A total of 743 samples from 46 populations of wild yew and 47 representative herbarium specimens were analyzed. Principle component analyses on 27 morphological characters and 15 bioclimatic variables plus altitude and maximum parsimony analysis on molecular ITS and trnL-F sequences indicated the existence of three distinct species occurring in different ecological (climatic) and altitudinal gradients along the HKH and adjacent regions <italic>Taxus contorta</italic> from eastern Afghanistan to the eastern end of Central Nepal, <italic>T. wallichiana</italic> from the western end of Central Nepal to Northwest China, and the first report of the South China low to mid-elevation species <italic>T. mairei</italic> in Nepal, Bhutan, Northeast India, Myanmar and South Vietnam.</p></sec><sec><title>Conclusion/Significance</title><p>The detailed sampling and combination of different data sets allowed us to identify three clearly delineated species and their precise distribution ranges in the HKH and adjacent regions, which showed no overlap or no distinct hybrid zone. This might be due to differences in the ecological (climatic) requirements of the species. The analyses further provided the selection of diagnostic morphological characters for the identification of yews occurring in the HKH and adjacent regions. Our work demonstrates that extensive sampling combined with the analysis of diverse data sets can reliably address the taxonomy of morphologically challenging plant taxa.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Mohapatra, K" uniqKey="Mohapatra K">K Mohapatra</name></author><author><name sortKey="Sehgal, R" uniqKey="Sehgal R">R Sehgal</name></author><author><name sortKey="Sharma, R" uniqKey="Sharma R">R Sharma</name></author><author><name sortKey="Mohapatra, T" uniqKey="Mohapatra T">T Mohapatra</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Exp Sito, O" uniqKey="Exp Sito O">O Expósito</name></author><author><name sortKey="Bonfill, M" uniqKey="Bonfill M">M Bonfill</name></author><author><name sortKey="Moyano, E" uniqKey="Moyano E">E Moyano</name></author><author><name sortKey="Onrubia, M" uniqKey="Onrubia 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Poudel</name></noRegion><name sortKey="Gao, Lian Ming" sort="Gao, Lian Ming" uniqKey="Gao L" first="Lian-Ming" last="Gao">Lian-Ming Gao</name><name sortKey="Li, De Zhu" sort="Li, De Zhu" uniqKey="Li D" first="De-Zhu" last="Li">De-Zhu Li</name><name sortKey="Li, De Zhu" sort="Li, De Zhu" uniqKey="Li D" first="De-Zhu" last="Li">De-Zhu Li</name><name sortKey="Liu, Jie" sort="Liu, Jie" uniqKey="Liu J" first="Jie" last="Liu">Jie Liu</name><name sortKey="Liu, Jie" sort="Liu, Jie" uniqKey="Liu J" first="Jie" last="Liu">Jie Liu</name><name sortKey="Moller, Michael" sort="Moller, Michael" uniqKey="Moller M" first="Michael" last="Möller">Michael Möller</name><name sortKey="Poudel, Ram C" sort="Poudel, Ram C" uniqKey="Poudel R" first="Ram C." last="Poudel">Ram C. Poudel</name><name sortKey="Poudel, Ram C" sort="Poudel, Ram C" uniqKey="Poudel R" first="Ram C." last="Poudel">Ram C. Poudel</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Poudel, Ram C" sort="Poudel, Ram C" uniqKey="Poudel R" first="Ram C." last="Poudel">Ram C. Poudel</name></noRegion><name sortKey="Ahrends, Antje" sort="Ahrends, Antje" uniqKey="Ahrends A" first="Antje" last="Ahrends">Antje Ahrends</name><name sortKey="Moller, Michael" sort="Moller, Michael" uniqKey="Moller M" first="Michael" last="Möller">Michael Möller</name><name sortKey="Thomas, Philip" sort="Thomas, Philip" uniqKey="Thomas P" first="Philip" last="Thomas">Philip Thomas</name></country><country name="Népal"><noRegion><name sortKey="Baral, Sushim R" sort="Baral, Sushim R" uniqKey="Baral S" first="Sushim R." last="Baral">Sushim R. Baral</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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